mkdir -p raw_data working_data resources scripts output/plots metadata
git init
conda install -c bioconda sra-tools -y
conda install bioconda::fastqc -y
conda install bioconda::samtools -y
conda install -c bioconda star -y
conda install -c bioconda subread -y
conda install conda-forge::r-base=4.4.2
conda install -c conda-forge r-essentials -y
conda install -c conda-forge r-irkernel -y
conda install -c bioconda bioconductor-deseq2 -y
conda install -c bioconda seaborn -y
conda install pandas -y
conda install matplotlib -y